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BBCH based Plant Phenological Development Ontology (PPDO)

PPDO extend the SKOS model to describe plant phenological development stages. This ontology and related dataset have been created during the https://www.d2kab.org [D2KAB project (2019-2023). The phenological scales of grapevine dataset is the result of a collaboration between the french institute of vine (IFV) and the TSCF lab of INRAE. We would like to thanks Xavier Delpuech and Marc Raynal for this collaboration.

Publications

C. ROUSSEY, X. DELPUECH, F. AMARDEILH, S. BERNARD, C. JONQUET. Semantic Description of Plant Phenological Development Stages, starting with Grapevine In Proceedings of 14th international conference on Metadata and Semantics Research Conference (MTSR), Madrid, Spain, 2-4 December 2020. In: Garoufallou E., Ovalle-Perandones MA. (eds) Metadata and Semantic Research. MTSR 2020. Communications in Computer and Information Science, vol 1355. Springer, Cham. The final authenticated version is available online at https://doi.org/10.1007/978-3-030-71903-6_25 . The author version is available at https://hal.archives-ouvertes.fr/hal-02996846

Access to git repository

The files and engineering procedure are available on the gitlab repository.

Access to SPARQL End Point

Access with a Web browser

Access for developer using their own sparql client

Query example

List of stages from Baggiolini scale. This scale is related to grapevine and it contains only secondary stages.

PREFIX vine: <http://ontology.inrae.fr/ppdo/resource/grapevine/>
SELECT DISTINCT ?stage
WHERE {
?stage a ppdo:SecondaryGrowthStage.
?stage skos:inScheme ?scale.
?scale skos:prefLabel ?label
FILTER REGEX(STR(?label), "baggiolini", "i")
} ORDER BY ?stage

These following examples query two sparql end point: fcu one and ppdo one.

Select the stages that belongs to a phenological scale which label contains the word "bbch". The scale is associated to a crop child of arboriculture

SELECT DISTINCT ?crop ?lbl ?scale ?stade WHERE {
  SERVICE <http://ontology.inrae.fr/frenchcropusage/sparql> {
    ?dummy a              skos:Concept .
    ?dummy skos:prefLabel "arboriculture"@fr .
    ?dummy skos:narrower+ ?crop .
    ?crop  skos:prefLabel ?lbl.
  } SERVICE <http://ontology.inrae.fr/ppdo/sparql> {
    ?scale a                  skos:ConceptScheme .
    ?scale skos:hasTopConcept ?topc .
    ?topc  fcu:relatedCrop    ?crop .
    ?topc  skos:narrower+     ?stade .
    FILTER (REGEX(STR(?scale), "bbch"))
  }
} ORDER BY ?stade

Which phenological scales (concept scheme) are related to a crop child of arboriculture.

SELECT DISTINCT ?crop ?lbl ?scale WHERE {
  SERVICE <http://ontology.inrae.fr/frenchcropusage/sparql> {
    ?dummy a              skos:Concept .
    ?dummy skos:prefLabel "arboriculture"@fr .
    ?dummy skos:narrower+ ?crop .
    ?crop  skos:prefLabel ?lbl.
  } SERVICE <http://ontology.inrae.fr/ppdo/sparql> {
    ?scale a                  skos:ConceptScheme .
    ?scale skos:hasTopConcept ?topc .
    ?topc  fcu:relatedCrop    ?crop .
  }
}

Access to git

All the files are available on the irstea gitlab repository [[https://gitlab.irstea.fr/copain/phenologicalstages]

Weather data

CASO

BSV

ppdo

AgronomicTaxon

AgroTechnoPôle

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