Agronomic Taxon Core

http://ontology.irstea.fr/agronomictaxon/core#

rdf:type owl:Ontology
owl:versionIRI <http://ontology.irstea.fr/agronomictaxon/core/20171115/1>
dc:creator "Catherine Roussey"@en
dcterms:modified "2017-11-15T11:40:51+01:00"^^xsd:dateTime
rdfs:comment "created by Irstea. This ontology is a module that is based on skos vocabulary, linnean taxonomy ODP and classification ODP. The module was enriched by specialising taxonomic relationship based on the AOS ontology. Taxon ranks are linked to their agrovoc concepts. Some disjoint axioms between ranks were added."@en
dc:title "Agronomic Taxon Core"@en

Table of content

Classes Object properties Datatype properties

Classes

agrotaxon:OrderRank
rdf:type owl:Class
rdfs:comment "Order is the fourth highest traditional taxon. E.g., in the case of humans the phylum is "Primates"."@en
rdfs:label "Order"@en
rdfs:label "Ordre"@fr
rdfs:seeAlso " Ontology Design Pattern linneanTaxonomy:Order"@en
rdfs:seeAlso "http://aims.fao.org/aos/agrovoc/c_330936"
rdfs:isDefinedBy ""http://www.ontologydesignpatterns.org/cp/owl/linnaeantaxonomy.owl#Order""
rdfs:subClassOf agrotaxon:Taxon
owl:disjointWith agrotaxon:SpecyRank
owl:disjointWith agrotaxon:PhylumRank
owl:disjointWith agrotaxon:VarietyRank
agrotaxon:ClassRank
rdf:type owl:Class
rdfs:comment "Class is the third highest traditional taxon. E.g., in the case of humans the class is "Mammalia";."@en
rdfs:label "Class"@en
rdfs:label "Classe"@fr
rdfs:seeAlso "Ontology Design Pattern linneanTaxonomy:Class"
rdfs:seeAlso "http://aims.fao.org/aos/agrovoc/c_330935"
rdfs:isDefinedBy ""http://www.ontologydesignpatterns.org/cp/owl/linnaeantaxonomy.owl#Class""
rdfs:subClassOf agrotaxon:Taxon
owl:disjointWith agrotaxon:OrderRank
owl:disjointWith agrotaxon:GenusRank
owl:disjointWith agrotaxon:FamilyRank
owl:disjointWith agrotaxon:SpecyRank
owl:disjointWith agrotaxon:PhylumRank
owl:disjointWith agrotaxon:KingdomRank
owl:disjointWith agrotaxon:VarietyRank
agrotaxon:GenusRank
rdf:type owl:Class
rdfs:comment "Genus is the sixth highest traditional taxon. E.g., in the case of humans the genus is "Homo"."@en
rdfs:label "Genre"@fr
rdfs:label "Genus"@en
rdfs:seeAlso "Ontology Design Pattern linneanTaxonomy:Genus"
rdfs:seeAlso "http://aims.fao.org/aos/agrovoc/c_11125"
rdfs:isDefinedBy ""http://www.ontologydesignpatterns.org/cp/owl/linnaeantaxonomy.owl#Genus""
rdfs:subClassOf agrotaxon:Taxon
owl:disjointWith agrotaxon:OrderRank
owl:disjointWith agrotaxon:SpecyRank
owl:disjointWith agrotaxon:PhylumRank
owl:disjointWith agrotaxon:KingdomRank
owl:disjointWith agrotaxon:VarietyRank
agrotaxon:FamilyRank
rdf:type owl:Class
rdfs:comment "Family is the fifth highest traditional taxon. E.g., in the case of humans the family is "Hominidae"."@en
rdfs:label "Famille"@fr
rdfs:label "Family"@en
rdfs:seeAlso "Ontology Design Pattern linneanTaxonomy:Family"@en
rdfs:seeAlso "http://aims.fao.org/aos/agrovoc/c_330937"
rdfs:isDefinedBy ""http://www.ontologydesignpatterns.org/cp/owl/linnaeantaxonomy.owl#Family""
rdfs:subClassOf agrotaxon:Taxon
owl:disjointWith agrotaxon:OrderRank
owl:disjointWith agrotaxon:GenusRank
owl:disjointWith agrotaxon:SpecyRank
owl:disjointWith agrotaxon:PhylumRank
owl:disjointWith agrotaxon:KingdomRank
owl:disjointWith agrotaxon:VarietyRank
agrotaxon:SpecyRank
rdf:type owl:Class
rdfs:comment "Species is the lowest traditional taxon. E.g., in the case of humans the species is "Homo sapiens"."@en
rdfs:label "Espèce"@fr
rdfs:label "Species"@en
rdfs:seeAlso "Ontology Design Pattern linneanTaxonomy:Species"@en
rdfs:seeAlso "http://aims.fao.org/aos/agrovoc/c_331243"
rdfs:isDefinedBy ""http://www.ontologydesignpatterns.org/cp/owl/linnaeantaxonomy.owl#Species""
rdfs:subClassOf agrotaxon:Taxon
owl:disjointWith agrotaxon:VarietyRank
agrotaxon:Taxon
rdf:type owl:Class
rdfs:comment "A taxon is a concept denoting a type of organism or of a group of organisms."@en
rdfs:label "Rang"@fr
rdfs:label "Rang taxinomique"@fr
rdfs:label "Taxon"@en
rdfs:label "Taxon"@fr
rdfs:seeAlso "Ontology Design Pattern linneanTaxonomy:Taxon"@en
rdfs:seeAlso "http://aims.fao.org/aos/agrovoc/c_7624"
rdfs:isDefinedBy ""http://www.ontologydesignpatterns.org/cp/owl/linnaeantaxonomy.owl#Taxon""
rdfs:subClassOf skos:Concept
agrotaxon:PhylumRank
rdf:type owl:Class
rdfs:comment "Phylum is the second highest traditional taxon. E.g., in the case of humans the phylum is "Chordata"."@en
rdfs:label "Division"@fr
rdfs:label "Embranchement"@fr
rdfs:label "Phylum"@en
rdfs:seeAlso "Ontology Design Pattern linneanTaxonomy:Phylum"@en
rdfs:seeAlso "http://aims.fao.org/aos/agrovoc/c_330949"
rdfs:isDefinedBy ""http://www.ontologydesignpatterns.org/cp/owl/linnaeantaxonomy.owl#Phylum""
rdfs:subClassOf agrotaxon:Taxon
owl:disjointWith agrotaxon:SpecyRank
owl:disjointWith agrotaxon:VarietyRank
agrotaxon:KingdomRank
rdf:type owl:Class
rdfs:comment "Kingdom is the highest traditional taxon. E.g., in the case of humans the kingdom is "Animalia"."@en
rdfs:label "Kingdom"@en
rdfs:label "Règne"@fr
rdfs:seeAlso "Ontology Design Pattern linneanTaxonomy:Kingdom"@en
rdfs:seeAlso "http://aims.fao.org/aos/agrovoc/c_330934"
rdfs:isDefinedBy "http://www.ontologydesignpatterns.org/cp/owl/linnaeantaxonomy.owl#Kingdom"
rdfs:subClassOf agrotaxon:Taxon
owl:disjointWith agrotaxon:OrderRank
owl:disjointWith agrotaxon:SpecyRank
owl:disjointWith agrotaxon:PhylumRank
owl:disjointWith agrotaxon:VarietyRank
agrotaxon:VarietyRank
rdf:type owl:Class
rdfs:comment "In botanical nomenclature, variety (abbreviated var.; in Latin: varietas) is a taxonomic rank below that of species and subspecies but above that of form. Source Wikipedia Variety is different from cultivar."@en
rdfs:comment "Une variété est un rang taxinomique de niveau inférieur au rang d'espèce. Ce rang est utilisé en botanique et en mycologie. source wikipedia Une variété ne doit pas être confondue avec les noms de variétés cultivées aussi dénommés cultivar"@fr
rdfs:label "Variety"@en
rdfs:label "Variété"@fr
rdfs:seeAlso "https://en.wikipedia.org/wiki/Variety_%28botany%29"@en
rdfs:subClassOf agrotaxon:Taxon
agrotaxon:Taxonomy
rdf:type owl:Class
rdfs:comment "Taxonomy is the academic discipline of defining groups of biological organisms on the basis of shared characteristics and giving names to those groups. Each group is given a rank and groups of a given rank can be aggregated to form a super group of higher rank and thus create a hierarchical classification. The groups created through this process are referred to as taxa (singular taxon). An example of a modern classification is the one published in 2009 by the Angiosperm Phylogeny Group for all living flowering plant families (the APG III system). from wikipedia"@en
rdfs:label "Taxinomie"@fr
rdfs:label "Taxonomie"@fr
rdfs:label "Taxonomy"@en
rdfs:subClassOf skos:ConceptScheme

Object properties

agrotaxon:hasClass
rdf:type owl:ObjectProperty
rdfs:comment "Link order taxon to class taxon."@en
rdfs:subPropertyOf agrotaxon:hasHigherRank
owl:inverseOf agrotaxon:includesOrders
rdfs:domain agrotaxon:OrderRank
rdfs:range agrotaxon:ClassRank
rdfs:label "order has class"@en
rdfs:seeAlso "http://aims.fao.org/aos/agrontology#hasClass"@en
agrotaxon:hasHigherRank
rdf:type owl:ObjectProperty
rdfs:comment "This property relates two taxa, where the first is more specific than the second. "@en
owl:inverseOf agrotaxon:hasLowerRank
rdfs:domain agrotaxon:Taxon
rdfs:range agrotaxon:Taxon
rdfs:label "a pour rang supérieur"@fr
rdfs:label "has higher rank"@en
rdfs:seeAlso "Ontology Design Pattern LinneanTaxonomy:hashigherRank"@en
rdfs:isDefinedBy ""http://www.ontologydesignpatterns.org/cp/owl/linnaeantaxonomy.owl#hasHigherRank""
agrotaxon:includesOrders
rdf:type owl:ObjectProperty
rdfs:comment "Link class taxons to order taxons."@en
rdfs:subPropertyOf agrotaxon:hasLowerRank
rdfs:domain agrotaxon:ClassRank
rdfs:range agrotaxon:OrderRank
rdfs:label "class rank includes order ranks"@en
rdfs:seeAlso "http://aims.fao.org/aos/agrontology#includesOrder"@en
agrotaxon:hasFamily
rdf:type owl:ObjectProperty
rdfs:comment "Link genus taxon to family taxon."@en
rdfs:subPropertyOf agrotaxon:hasHigherRank
owl:inverseOf agrotaxon:includesGenus
rdfs:domain agrotaxon:GenusRank
rdfs:range agrotaxon:FamilyRank
rdfs:label "genus has family"@en
rdfs:seeAlso "http://aims.fao.org/aos/agrontology#hasFamily"@en
agrotaxon:includesGenus
rdf:type owl:ObjectProperty
rdfs:comment "Link family taxons to genus taxons"@en
rdfs:subPropertyOf agrotaxon:hasLowerRank
rdfs:domain agrotaxon:FamilyRank
rdfs:range agrotaxon:GenusRank
rdfs:label "family rank includes genus rank"@en
rdfs:seeAlso "http://aims.fao.org/aos/agrontology#includesGenus"@en
agrotaxon:hasGenus
rdf:type owl:ObjectProperty
rdfs:comment "link species taxon to genus taxon."@en
rdfs:subPropertyOf agrotaxon:hasHigherRank
owl:inverseOf agrotaxon:includesSpecies
rdfs:domain agrotaxon:SpecyRank
rdfs:range agrotaxon:GenusRank
rdfs:label "Species has genus"@en
rdfs:seeAlso "http://aims.fao.org/aos/agrontology#hasGenus"@en
agrotaxon:includesSpecies
rdf:type owl:ObjectProperty
rdfs:comment "Link genus taxons to species taxons"@en
rdfs:subPropertyOf agrotaxon:hasLowerRank
rdfs:domain agrotaxon:GenusRank
rdfs:range agrotaxon:SpecyRank
rdfs:label "genus rank includes specy rank"@en
rdfs:seeAlso "http://aims.fao.org/aos/agrontology#includesSpecies"@en
agrotaxon:hasLowerRank
rdf:type owl:ObjectProperty
rdfs:comment "This property relates two taxa, where the first is less specific than the second."@en
rdfs:domain agrotaxon:Taxon
rdfs:range agrotaxon:Taxon
rdfs:label "a pour rang inférieur"@fr
rdfs:label "has lower rank"@en
rdfs:seeAlso "Ontology Design Pattern LinneanTaxonomy:hasLowerRank"@en
rdfs:isDefinedBy ""http://www.ontologydesignpatterns.org/cp/owl/linnaeantaxonomy.owl#hasLowerRank""
agrotaxon:hasHigherRankTransitive
rdf:type owl:ObjectProperty
rdf:type owl:TransitiveProperty
rdfs:comment "This property relates two taxa, where the first is more specific than the second. This property transitive."
rdfs:subPropertyOf agrotaxon:hasHigherRank
owl:inverseOf agrotaxon:hasLowerRankTransitive
rdfs:label "a pour rang supérieur, relation transitive"@fr
rdfs:label "has higher rank, transitive property"@en
agrotaxon:hasLowerRankTransitive
rdf:type owl:ObjectProperty
rdf:type owl:TransitiveProperty
rdfs:comment "This property relates two taxa, where the first is less specific than the second. This property is transitive."@en
rdfs:subPropertyOf agrotaxon:hasLowerRank
rdfs:label "a pour rang inférieur, relation transitive"@fr
rdfs:label "has lower rank, transitive property"@en
agrotaxon:hasKingdom
rdf:type owl:ObjectProperty
rdfs:comment "link phylum taxon to kingdom taxon"@en
rdfs:subPropertyOf agrotaxon:hasHigherRank
owl:inverseOf agrotaxon:includesPhyla
rdfs:domain agrotaxon:PhylumRank
rdfs:range agrotaxon:KingdomRank
rdfs:label "phylum has Kingdom"@en
agrotaxon:includesPhyla
rdf:type owl:ObjectProperty
rdfs:comment "link kingdom taxons to phyla taxons"@en
rdfs:subPropertyOf agrotaxon:hasLowerRank
rdfs:domain agrotaxon:KingdomRank
rdfs:range agrotaxon:PhylumRank
rdfs:label "kingdom rank includes phylum ranks"@en
agrotaxon:hasOrder
rdf:type owl:ObjectProperty
rdfs:comment "Link family taxon to order taxon."@en
rdfs:subPropertyOf agrotaxon:hasHigherRank
owl:inverseOf agrotaxon:includesFamilies
rdfs:domain agrotaxon:FamilyRank
rdfs:range agrotaxon:OrderRank
rdfs:label "Family has order"@en
rdfs:seeAlso "http://aims.fao.org/aos/agrontology#hasOrder"@en
agrotaxon:includesFamilies
rdf:type owl:ObjectProperty
rdfs:comment "Link order taxons to family taxons."@en
rdfs:subPropertyOf agrotaxon:hasLowerRank
rdfs:domain agrotaxon:OrderRank
rdfs:range agrotaxon:FamilyRank
rdfs:label "Order rank includes family rank"@en
rdfs:seeAlso "http://aims.fao.org/aos/agrontology#includesFamily"@en
agrotaxon:hasPhylum
rdf:type owl:ObjectProperty
rdfs:comment "link class taxon to phylum taxon"@en
rdfs:subPropertyOf agrotaxon:hasHigherRank
owl:inverseOf agrotaxon:includesClasses
rdfs:domain agrotaxon:ClassRank
rdfs:range agrotaxon:PhylumRank
rdfs:label "class has phylum"@en
agrotaxon:includesClasses
rdf:type owl:ObjectProperty
rdfs:comment "link phylum taxons to class taxons"@en
rdfs:subPropertyOf agrotaxon:hasLowerRank
rdfs:domain agrotaxon:PhylumRank
rdfs:range agrotaxon:ClassRank
rdfs:label "phylum rank includes class rank"@en
agrotaxon:hasSpecy
rdf:type owl:ObjectProperty
rdfs:comment "link variety taxon to species taxon"@en
rdfs:subPropertyOf agrotaxon:hasHigherRank
owl:inverseOf agrotaxon:includesVarieties
rdfs:domain agrotaxon:VarietyRank
rdfs:range agrotaxon:SpecyRank
rdfs:label "variety has specy"@en
agrotaxon:includesVarieties
rdf:type owl:ObjectProperty
rdfs:comment "link specy taxons to variety taxons"@en
rdfs:subPropertyOf agrotaxon:hasLowerRank
rdfs:domain agrotaxon:SpecyRank
rdfs:range agrotaxon:VarietyRank
rdfs:label "specy rank includes variety rank"@en

Datatype properties

agrotaxon:altScientificName
rdf:type owl:DatatypeProperty
rdfs:comment "a taxon may have different scientific name depending of the evolution of taxonomy. This property store alternative scientific name also known as synonym."@en
rdfs:subPropertyOf agrotaxon:hasScientificName
rdfs:label "alternative scientific name"@en
rdfs:label "synonym scientific name"@en
agrotaxon:hasScientificName
rdf:type owl:DatatypeProperty
rdfs:comment "Binomial nomenclature is a formal system of naming species of living things by giving each a name composed of two parts, both of which use Latin grammatical forms. Such a name is called a binomial name (which may be shortened to just "binomial"), a binomen or a scientific name; more informally it is also called a Latin name. The first part of the name identifies the genus to which the species belongs; the second part identifies the species within the genus. For example, humans belong to the genus Homo and within this genus to the species Homo sapiens. Source Wikipedia"@en
rdfs:label "a pour nom scientifique"@fr
rdfs:label "has scientific name"@en
rdfs:seeAlso "http://eunis.eea.europa.eu/rdf/species-schema.rdf#scientificName"@en
rdfs:seeAlso "http://lod.taxonconcept.org/ontology/txn.owl#scientificName"@en
rdfs:seeAlso "http://purl.org/biodiversity/eol/scientificName"@en
rdfs:seeAlso "http://purl.org/biodiversity/taxon/scientificName"@en
rdfs:seeAlso "http://purl.uniprot.org/core/scientificName"@en
rdfs:seeAlso "https://en.wikipedia.org/wiki/Binomial_nomenclature"@en
agrotaxon:altVernacularName
rdf:type owl:DatatypeProperty
rdfs:comment "un synonyme du nom vernaculaire préféré"@fr
rdfs:subPropertyOf agrotaxon:hasVernacularName
rdfs:label "alternative vernacular name"@en
rdfs:label "nom vernaculaire synonyme"@fr
agrotaxon:hasVernacularName
rdf:type owl:DatatypeProperty
rdfs:comment "In biology, a common name of a taxon or organism (also known as a vernacular name, English name, colloquial name, trivial name, trivial epithet, country name, popular name, or farmer's name) is a name that is based on the normal language of everyday life; this kind of name is often contrasted with the scientific name for the same organism, which is Latinized. A so-called "common name" is sometimes frequently used, but that is by no means always the case. Source Wikipedia"@en
rdfs:comment "Un nom vernaculaire est un nom usuel, en langue locale, donné à une ou plusieurs espèces animales ou végétales dans son pays ou sa région d'origine. Il peut donc désigner des taxons très différents selon le contexte. Les noms vernaculaires sont souvent repris pour former la base des noms normalisés ou des noms vulgaires créés pour permettre la vulgarisation des noms scientifiques. Malgré leurs imprécisions, ils ont souvent la faveur dans le langage courant et font partie de la culture populaire. source wikipedia"@fr
rdfs:label "a pour nom commun"@fr
rdfs:label "a pour nom vernaculaire"@fr
rdfs:label "has common name"@en
rdfs:label "has vernacular name"@en
rdfs:seeAlso "http://ontologi.es/biol/botany#term_commonName"@en
rdfs:seeAlso "http://purl.org/biodiversity/taxon/commonName"@en
rdfs:seeAlso "https://en.wikipedia.org/wiki/Common_name"@en
agrotaxon:prefScientificName
rdf:type owl:DatatypeProperty
rdfs:comment "le nom scientifique qui est en cours d'usage actuellement"@fr
rdfs:subPropertyOf agrotaxon:hasScientificName
rdfs:label "nom scientifique préféré"@fr
rdfs:label "preferred scientific name"@en
agrotaxon:prefVernacularName
rdf:type owl:DatatypeProperty
rdfs:comment "le nom vernaculaire le plus connu pour ce taxon"@fr
rdfs:subPropertyOf agrotaxon:hasVernacularName
rdfs:label "nom vernaculaire préféré"@fr
rdfs:label "preferred vernacular name"@en